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SSCprofiler

SSC (Sequence, Structure and Conservation) profiler is a tool for scanning specific genomic regions for miRNA genes using human genomic coordinates (hg17).

How to cite us: When you use SSCprofiler in your research, please cite our paper: Oulas A, Boutla A, Gkirtzou K, et al. Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach. Nucleic Acids Res. 2009 Jun;37(10):3276-87. doi: 10.1093/nar/gkp120.

Important: This web interface is limited to sequences up to 1MB.

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Parameters

The default values are as defined in the original SSCprofiler paper.

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