MatureBayes

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A tool for finding mature miRNA within a miRNA precursor sequence using a Naive Bayes classifier.

Paste the sequence of a single miRNA precursor:

Example:

UACAAUCCAACGAGGAUUCUAAUUUCUCCACGUCUUUGGUAAUAAGGUUUGGCAAAGAUGUGGAAAAAUUGGAAUCCUCAUUCGAUUGGUUAUAACCA

OR

uacaauccaaugagguucuaauuucuccacgucuuugguaauaagguuuggcaaagauguggaaaaauuggaauccucauucgauugguuauaacca





Submit a file with multiple sequences in the following format:

Simple text format where each sequence occupies two lines. The first line has the form:
> name
where the name is information assign to the sequence and the second line is the actual sequence.

Input Example:
>hsa-mir-576 MI0003583
UACAAUCCAACGAGGAUUCUAAUUUCUCCACGUCUUUGGUAAUAAGGUUUGGCAAAGAUGUGGAAAAAUUGGAAUCCUCAUUCGAUUGGUUAUAACCA
>hsa-mir-194-2 MI0000732
UGGUUCCCGCCCCCUGUAACAGCAACUCCAUGUGGAAGUGCCCACUGGUUCCAGUGGGGCUGCUGUUAUCUGGGGCGAGGGCCAG



Click here to download the source code (in tar.gz format, size: 4.04MB)

How to cite us:
When you use MatureBayes in your research, please cite our paper: Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P. MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors. PLoS One. 2010 Aug 6;5(8):e11843. doi: 10.1371/journal.pone.0011843; PMID: 20700506; PMCID: PMC2917354

For questions, comments and feedback regarding MatureBayes, please contact Panayiota Poirazi (software [AT] dendrites [DOT] gr)